well congrats on your first jeep, and have fun learning. 4.0L jeeps are my favorite jeeps to work on. they are super simple. the suspension is litterally as simple as it looks, and jeeps are insanely interchangeable over the years and different models.
anyways, back to your problem.
1)how much lift did you install???
2)depending on how much lift, did you shim the axle to point the pinion up???
i'm pretty sure that noise is coming from your rear driveshaft. so after you pull those 4 small bolts at the rear yoke, and slide the driveshaft out of the t-case, i'm pretty sure the noise will be gone. if that's the case, you'll have to either/and/or .............shim the axle, replace the u-joint, install a t-case drop or a SYE (slip yoke eliminator).