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The waveform shown in the VRS link provided earlier looks exactly like the waveform from the CPS and the Tranny output speed sensor. If you're looking at the picture in the Jeep Renix Fuel Injection Manual, the sawtooth pattern is labelled "magnetic field", so the inducted voltage is due to the rate-of-change of the field - you get the spikes at the tips of the sawtooth.
In any case, I agree that the cap can only reduce the voltage spikes as the cap will act as a 1st order low-pass filter. Adding the cap in parallel makes it a low-pass filter with a cutoff freq of about 80kHz if you assume the nominal sensor resistance of 200 ohms. The rep rate for the pulses is about 5000 pulses/second but the frequency content of the spike should be a lot higher. My guess is that it's simply cleaning up a noisy sensor signal - perhaps due to a cracked magnet in the sensor. The computer undoubtably has a cap on the signal lines anyway.
The voltage peek of the spikes is dependent on the engine speed too. They grow proportionally bigger with engine speed. When I was building a box to modify the tranny sensor signal to use an 89 TCU with a 99 trans, I measured the voltages from zero to nearly 30-volts at 60 mph.
I'm not a EE, but I'm a reasonably competent electronics tech and I happen to do a lot of work with acoustics, filters, amplifiers, and data acquisition systems.
If a 3-cent cap fixes your problem then by all means be happy. It might not work for everyone else and I highly recommend having a spare with you in case this bandaid stops working.
Re-reading this old thread, and your post got me to thinking that maybe the capacitor in his ECU failed, or its capacitance changed enough, that his Edisonian approach of trial and error brought the system capacitance back OEM spec?