1987 AMC XJ. Modifications to engine/ignition include Mopar Performance ECU, auto TPS replaced manual, added MAP input voltage adjustment, replaced exhaust manifold with Borla header, added (2) extra ground cables to engine/body, replaced CPS with high-altitude version, removed and blanked EGR valve including vacuum lines, removed vacuum lines for warm intake air valve in air cleaner housing, electric cooling fan relay has been rewired to allow function if ignition is off, and fuel injectors have been replaced with those for '88-later version (according to Mopar's parts manual).
Most of the above parts replacement were due out of necessity from original parts failing, i.e. cracked manifold, intermittent signal, etc. The remainder were done to eliminate existing or potential issues, i.e vacuum leaks, stuck components, etc.
Have become extremely proficient at diagnosing problems over the last 22 years. Having the factory manuals has of course helped.