I'm going to get an angle finder tomorrow so I can actually get the measurements. Until then let me give a bit more thorough description of the symptoms.
When I take off and though most of the speed range i can feel a faint vibration. It isn't very noticeable under harder acceleration, but it could just be hidden by the vibrations of the engine. I don't really feel it through the steering wheel, but through the whole vehicle and the pedal. That isn't what worries me, the second part is what needs fixed for sure. When I let off the gas a bit so I am barely applying it I get a sound almost like I just hit a little rumble strip, but different. If I take my foot all the way off it usually stops but if i put the pedal down a little it happens again.
If I coast down a hill and bump the shifter up to neutral the noise stays almost constantly.
Those are pretty much the symptoms. I tightened the U-bolts on the axle very well, but I'll continue to recheck them.
I know my pictures are pretty much useless without the angles, but my untrained eye thinks the pinion could stand to be rotated up, towards the floorboard since I believe the two are supposed to be close to one another... I'll see if the angle finder confirms this and try to figure out what shims I should get.
On that note, anyone have a trick for measuring the pinion angle? the drive shaft is simple, just stick the thing on there. but there isn't really room on the pinion. Maybe I can measure something perpendicular to it and take it's complement to get the angle.