Also, here's some tips for all the other poor saps trying this job who might stumble across this thread in the future:
1) Prior to doing this, I had never once cut brake line in my life and I was confused by the whole double flare/bubble flare situation, and didn't start to understand it until I ripped several pieces of brake parts out of my Jeep and the WJ at the junkyard. Do yourself a favor and get a brake line cutting tool off eBay, I got a set of them for $4... there are tons listed, use those exact terms. I couldn't find one anywhere else, including the big chain auto parts stores. Trust me, using a hacksaw or hedge clippers and trying to grind the edges even doesn't work - I TRIED! As far as the flaring tool, I recommend this one from AutoZone:
http://www.autozone.com/in_our_stores/loan_a_tool/tubing/flaring_tools.htm
You can rent it for a $24 deposit. I decided it might come in handy at some point so I just ate the cost, but I also ended up breaking it to pieces so maybe that's bad karma. Anyway, if you haven't done this before....DON'T FEAR THE FLARES! The directions are right on the box, it's a piece of cake. A bubble flare is just a single flare (ie: do half of a double flare, it'll make sense once you have this tool/instructions). For some reason, this wasn't documented on the interwebz very well and confused the hell out of me for the longest time. You don't need any special equipment to make a bubble flare as opposed to a double flare or vice-versa.
2) Going back a step here, after you cut the brake lines you NEED to clean the ends that will become flared up. First you need to run a drill bit back and forth down the piping to make the passageway nice, clear and even....then use a metal file to make the flat surface at the end nice and pretty, then round the edges ever so slightly with the file. If you look for directions online for this part, you will find big French words like CHAMFER and DEBURR....but they simply mean exactly what I just said. It's easier than it sounds. When you do get to flaring, PRACTICE PRACTICE PRACTICE! It's worth spending the extra ten minutes become a pro instead of destroying the brake lines under your hood at first. I didn't want to practice practice practice and it took me twice as long to do this because of that!
3) I used the original '91 ABS brake pedal assembley/pushrod with absolutely no modifications. It didn't look like it was going to fit at first, but once everything was out of the way and it was all lined up it clicked onto the brake pedal and sits there just fine. Maybe all XJs are made differently, but that's how it worked on mine. No more ABS lights on the dash after ripping all that junk out, tail lights work perfectly.
I'll take pictures of the install at some point (it's snowing right now). Hope that helps somewhat!