I'm running an (XJ) NV3550 behind a 92 HO 4.0L, using a Renix control system.
The Renix flywheel works fine with the NV3550's starter location, and the CPS location.
The Renix vs HO sensor cutouts on the flywheel are totally different, but as long as you use the correct one for the engine control you're using, there shouldn't be any problems.
I never heard of starter issues when swapping XJ tranny's,
but when swapping anything, you can stack tolerances, or lose shims that were originally there, and need to shim things back into place.
BTW, I did the swap to replace a 2wd Peugot in an 88' MJ.
I used an 01' XJ NV3550, with the 231, complete hydrolic clutch linkage & the 01' X-member.
It all bolted in (had to drill a couple holes for the clutch master cylinder).