It has been my experience that when one of the junctions fail to seal properly, the brakes will not bleed out due to air being pulled into the system.
MC. Unless the master cylinder was disturbed by removing the lines from it, it is seriously doubtful that it is the
cause of this issue.
If it were me, I would revisit the connection points where the new brake lines were installed and go from there.
In the past, it has been customary to bleed the longest line first working your way to the shortest line. That would mean that the back axle gets done first with the passenger side starting the bleed cycle. After completing the back axle, the passenger side front gets done next followed by the driver's side front.
If you do decide to bleed the MC, you will need a way to connect the output ports back to the MC reservoir so as to prevent air getting into the MC. Be advised though... Once the lines at the MC are broken open, the entire system will be full of air.
Usually, I will do a gravity bleed first prior to connecting my "one man" brake bleeder which is nothing more than a hand held vacuum pump. It will take time.
But, until and unless you can verify that all of the new lines are sealed, you will be chasing this forever. It would have value to have all of the bleeder valves closed and then pump the brakes until pressure is developed. If pressure can not be developed, then you should be able to find the leaks as the fluid should aught to be dripping out of the faulty joint(s).
This is the bleeder that I use:
Works just fine for an inexpensive tool.
It does not need to be said but I will say it anyway. Do not allow the MC to go low on fluid. Once you draw air into the system by allowing the level to drop, you are in for a long haul for bleeding the system...