The full traction kit relocates both lower and upper control arms. maybe I read your post wrong, but I think you meant that the lower arms are moved, but not the uppers. Just wanted to clarify that the FT kit moves both the upper and lowers back to just forward of the crossmember.
The idea is that with long arms, you don't have such steep control arm angles with higher lifts. Notice that most long arm kits are for 5.5 inches and up. That's because around 4-5 inches, the control arms have a steep angle on them and make for a rough ride. I had an 87 xj with 4 inches on short arms and now I have a 99 with the FT long arm and the ride is night and day compared to the short arms. All you more experienced guys out there, correct me if i'm wrong, but that's just one of the reasons that LA kits are out there, is because of the steep angle of the control arms.