The only difference I can remember is that the 93 block will not have a temp sensor hole in it, but this sensor will fit in the 93's thermostat housing. It will also not have a threaded hole for the knock sensor, but may have a blank hole that can be threaded if you wish to retain said sensor. The legal way to do this swap would involve swapping the 89's head onto the newer block so that both manifolds, and the EGR system could be retained. If the 93's head and intake manifold are to be used, you lose the option of keeping the EGR system, and need to adapt the TPS sensor to the 93's TB. If the EGR is removed, you must either plug the hole in the exhaust manifold, or use the later manifold.
Of course everything electronic must be swapped from the 89 including all sensors, alternator, distributor, etc.
It has been done alot, however is not as direct of a swap as you would like.